Save as herein-before provided, all the Fees which any such Clerk as aforesaid would have been for the Time being entitled to receive to his own Use if such Order had not been made shall, so long as any Order for Payment of such Clerk by Salary in lieu of Fees is in force, be by him received and paid in any County, Riding, Division, or Liberty to the Treasurer in aid of the County Rate or Rate in the Nature of a County Rate of such County, Riding, Division, or Liberty, and in any Borough to the Treasurer in aid of the Borough Fund, and such Fees shall be accounted for from Time to Time in such Manner and under such Regulations as the Justices at Quarter Sessions, or in any Borough the Council or other governing Body, may direct.